Top Puerto Rico Water Tours

Check out the bioluminescence in Mosquito Bay on Vieques Island with this small group night tour. You’ll be picked up at the convenient departure point, then taken to your catamaran. Put on your life jacket for safety, and then relax into the tour where you’ll see the bright natural phenomenon.

Immerse yourself in nature with a small-group tour to the El Yunque Rainforest. Hike through the jungle while learning about the flora and fauna. Spend time at a waterfall and pool where you can cool off with a swim, play around in the natural waterslides, or jump off a cliff. Afterward, stop at Playa Luquillo, where you can enjoy the beach or grab food at your own cost.

Go snorkeling in an area that's known for turtle sightings with this small-group tour, led by a local guide. You'll head down into waters of a marine sanctuary area where turtles are known to congregate and having a guide on hand will help you increase your chances of spotting the aquatic creatures.

Immerse yourself in the enchanting waters of Mosquito Bay on this captivating one-hour night kayak tour. Paddle through one of the world’s brightest bioluminescent bay, where each stroke of your paddle ignites a dazzling display of blue light, thanks to the abundant dinoflagellates that thrive in these waters. Perfect for families and friends, this adventure promises a fun and safe outing under the starry sky, guided by experienced leaders who ensure your enjoyment. Discover the magic of nature as you navigate through one of Puerto Rico's most breathtaking natural wonders. Meeting point at the Green Store at 7:00 pm for the first trip or 8:30 pm for the second trip. Before arriving in Vieques you must purchase a round trip ferry ticket. You can return the same night to Ceiba P.R. if you choose the first tour and reserve taxi transportation from the bio bay to the ferry terminal. Otherwise, you must book overnight accommodations in Vieques until the next ferry boat the following day.

Take command of your own mini-speedboat for a half-day of snorkeling and navigating among the beautiful tropical islands just off Puerto Rico’s east coast. Follow the lead of your certified guide as you pilot your own vessel with a convoy of other speedboats through the turquoise-blue waters of the La Cordillera Cays Nature Reserve. During the day, snorkel amidst schools of colorful fish and relax on stunning white-sand beaches. Your speedboat adventure also includes a guide, a personal cooler with ice, snacks and refreshments, plus snorkel and safety gear.

Explore Aguadilla’s gorgeous reef, fish, and sea turtles on this small-group tour, led by a marine biologist guide. Before you start snorkeling, have a safety briefing to make sure you know how to use your gear. Snorkels, life jackets, and paddle boards are provided, so you don't need to organize them separately.

Experience the beauty of Culebra Island at your own pace with a hassle-free day trip designed for independent travelers, families, and adventure seekers. Explore top spots like Flamenco Beach, Tamarindo Beach, or choose a boat trip to Culebrita, depending on your interests. Enjoy a personalized booking link and dedicated support to reserve exactly what you need, including Jeep or golf cart rentals, snorkeling tours, boat trips, taxis, and beach chair and umbrella rentals at Flamenco Beach. All tours and rentals on Culebra are booked and paid separately, giving you full flexibility. Travel with direct, stress-free transfers from San Juan and a priority-style return service that avoids parking hassles, long ferry lines, and crowded shuttles. Schedule: Mon–Fri: Shuttle 6:45 am | Ferry 9:00 am | Return 5:30 pm | San Juan 8:45 pm Sat–Sun: Shuttle 5:55 am | Ferry 8:00 am | Return 4:00 pm | San Juan 6:45 pm An easy, flexible, and worry-free way to discover Culebra.

Experience the magic of Puerto Rico’s coastal ecosystems on this guided nighttime kayaking tour, starting in Fajardo’s mangrove forest and leading to the glowing waters of Laguna Grande. Paddle through winding channels as night falls, and witness the natural wonder of bioluminescence—caused by plankton lighting up the water with every stroke. While brightness levels vary depending on natural conditions, guides may use a tarp to block moonlight and enhance visibility, helping you to make the most of your time on the water—an experience you'd miss out on if exploring solo.

Enjoy an unforgettable experience in our unique private boat ride at the bay of San Juan. You will have the opportunity to know some history and have some fun on our power boat around the bay of San Juan with great music system on board!

Discover two of Puerto Rico's top attractions in just one day on this time- and money-saving combination tour. Explore El Yunque rainforest, swim in its natural pools, and refresh in its waterfalls. Later, kayak through the Red Mangrove Forest to the Bioluminescent Lagoon where, with each stroke of your paddle, sparkles will appear in the water.

Explore the beauty of Puerto Rico on this group tour of the northern coast. See the rock formations of the karst area along the Atlantic Ocean, continue to the mountains, and visit one of the most impressive caves on the island. Learn about the history of Puerto Rico from your experienced guide and end the day with a visit to two waterfalls where you can relax on the river.

Combine the thrill of riding a jet ski with sightseeing through San Juan Bay with a guided jet ski tour. Ride solo or with a passenger as you follow your guide around on a comfortable Yamaha Wave Runner with cruiser seats. Enjoy views of San Juan and attractions such as Castillo San Felipe del Morro and La Fortaleza from the water for a great photo opportunity.

No trip to Fajardo is complete without visiting the stunning blue waters of the Caribbean. There are countless excursions available on the water; however, most have become a booze cruise and don’t give you the optimum atmosphere for exploring. This Fajardo Afternoon Boat and Snorkeling Tour still offers alcoholic beverages but gives you the energy to focus on snorkeling and learning about life under the sea.

Live out your island castaway fantasies as you visit the deserted tropical island of Cayo Icacos from San Juan on this catamaran sailing cruise. Escape the crowds on land and sail into the aquamarine waters of the Caribbean, admiring views of the El Yunque mountains in the distance, before arriving at the nature preserve of Icacos for a leisurely day of swimming, snorkeling, lunch, and rum cocktails.

Set sail to Cayo Icacos on board a catamaran with this boat tour package. Traveling through La Cordillera Reef Nature Reserve, enjoy taking in Puerto Rico’s marine life from above and below the waves. This package includes snorkeling stops at coral reefs, as well as leisure time at a beach. Perfect for guests who want to prioritize snorkeling but would like to leave the itinerary to the experts.

Experience the natural phenomenon that is Bio Bay on an evening kayak tour. Head from San Juan to Fajardo and in the late afternoon and board your kayak. As you paddle through the mangrove forest, the microscopic organisms in the water become illuminated, creating a magical effect. Learn about the bioluminescent creatures as well as the surrounding environment from your tour guide as you kayak.

The Laguna Grande Bioluminescent Bay in Fajardo is a must for adventurous travelers visiting Puerto Rico. Tiny organisms called dinoflagellates sparkle in the water when it’s disturbed and a night kayak trip is an amazing way to appreciate the bioluminescence. After donning your lifejacket and a quick kayaking lesson, paddle out through the mangroves to the tropical bay, with live commentary from your guide. Please note: weight restrictions apply.

Explore the underwater world of Culebra Island during this snorkeling excursion to Flamenco Beach. A perfect snorkeling expedition for beginners or families with small children, the calm, clear, waters make for easy snorkeling and swimming. During the time at Culebra Island, you can choose to snorkel, swim, use the provided stand-up paddleboards, or simply relax.

Improve your chances of seeing Laguna Grande's bioluminescent glow with this group kayaking experience at night. Setting off from Fajardo and lead by a marine biologist, gain a deeper understanding of bioluminescence and the ecosystems as you paddle. This experience is suitable for kayakers of all levels, with a safety briefing issued before all expeditions.

Escape the crowds on land and see a part of Puerto Rico that most travelers miss on a sailing tour by catamaran to Culebra Island —home to white-sand beaches and coral reefs, and hailed as one of the most beautiful islands in the world. Lunch, alcoholic drinks, and snacks are included on board, to keep you hydrated and refreshed. A visit to Culebra is weather-dependent, so other possible beach stops include the beautiful Icacos island or one of Vieques' beaches.

Enjoy Puerto Rico's waters from a luxurious 54-foot catamaran. How you spend your time is up to you: Recline on daybeds, shoot down water slides, or head to the open bar. Visit hidden parts of the Cordillera Cays where you can dive into the water with less crowds of tourists. Dine on an authentic Puerto Rican meal featuring pork, roasted chicken, and more.

Private boat cruise through Old San Juan Bay with breathtaking views of El Morro, La Fortaleza, and the city skyline. Enjoy a unique, intimate experience on the water with personalized service, local insight, history facts and unforgettable moments every trip. Perfect time for families or groups.

Our exclusive, small-group El Yunque tour offers expert guides, and a unique adventure! Unlike large tours, we provide a personalized experience with knowledgeable who share insider stories and take you to waterslide, waterfalls and viewpoints. Enjoy refreshing swims in crystal-clear pools, learn about the rainforest’s rich ecosystem, and spot exotic wildlife along the way. We blend adventure, education, and relaxation, making every moment memorable. Whether you’re hiking to breathtaking vistas, or simply soaking in the beauty of the rainforest, our tour is designed to provide a deeper, more authentic connection with nature. It’s not just a tour; it’s a journey into the heart of Puerto Rico’s natural wonder, perfect for those seeking something beyond the ordinary. Book with us for an unforgettable, one-of-a-kind El Yunque experience!

Paddle a kayak through the peaceful waters of Fajardo's mangroves on the way to the Bioluminescent Bay during this evening tour. You are provided with all equipment and instruction, so even beginners can participate. Follow your guide's lead and listen to in-depth commentary as you travel, arriving at the Bioluminescent Bay at dark to see the water light up beneath you.